GgaEX1014027 @ galGal3
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52423130-52429202:-
Coord C1 exon
chr5:52429134-52429202
Coord A exon
chr5:52425961-52426557
Coord C2 exon
chr5:52423130-52423227
Length
597 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTGTTTCCTTTGCAGTGA
3' ss Score
8.89
5' ss Seq
GTAGTATGT
5' ss Score
3.71
Exon sequences
Seq C1 exon
GTTTAGATCGAGATAGAATAGCAATTGGTTCAGAAGAAGGACTGTATGTGATAGAAGTGACCCGTGACG
Seq A exon
TGATTGTCCGCGCTGCTGACTGTAAGAAGGTGTACCAGATCGAGCTTGCTCCCAAAGAGAAAATCATCATCCTCATCTGTGGCCGGAACCATCACGTTCATCTTTTCCCCTGGGCCACTCTGGACGGATCAGAAGGAAGCTTTGACATTAAGCTTGCAGAAACTAAAGGCTGCCAATTGATTACAACTGGAACGCTAAAGAAGAGTTCTGCGACTTGTTTGTTTGTAGCTGTTAAACGGCAGGTTTTTTGCTATGAAATTCACAGAACTAAACCTTTCCACAAAAAATTCAGTGAAATTCAGGCTCCAGGAACTGTTCAGTGGATGACAGTGTTCAAGGACAAGCTCTGTGTTGGCTACCAGTCTGGGTTCTCTCTGTTGACCATCCAGGGAGATGGACAATCTATAAACCTGGTAAATCCTAATGACCCCTCACTTATGTTCCTCTCACAGCAGTCTTTTGATGCCCTTTGTGCTGTGGAGCTCAGTAATGAGGAGTACCTGCTTTGCTTCAGCCATATGGGAGTATACGTCGATTCGCAAGGTCGAAGGTCACGCATGCAGGAACTAATGTGGCCTGCAACTCCTGTTGCCTGTA
Seq C2 exon
GTTGCAATTCGTCGTACGTAACAGTGTACAGTGAATATGGTGTTGATGTATTTGATGTTAACACTATGGAATGGGTCCAGACTATTGGCCTGCGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'30-38,'30-36,32-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(10.1=100)
A:
PF0078017=CNH=FE(74.5=100)
C2:
PF0078017=CNH=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]