RnoEX0019008 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135752150-135756712:-
Coord C1 exon
chr6:135756650-135756712
Coord A exon
chr6:135754822-135755421
Coord C2 exon
chr6:135752150-135752247
Length
600 bp
Sequences
Splice sites
3' ss Seq
CCGGCGTCCTCTGCTCACAGTGA
3' ss Score
8.06
5' ss Seq
GTAGTATGT
5' ss Score
3.71
Exon sequences
Seq C1 exon
ATGGAGACAGAATTGCGGTCGGCCTGGAAGAAGGGCTCTACGTCATTGAGCTCACCCGAGATG
Seq A exon
TGATCGTCCGCGCTGCTGACTGCAAGAAGGTATACCAGATCGAGCTGGCGCCCAAGGAGAAGCTCATCCTCCTCCTCTGTGGCCGGAACCACCACGTGCACCTCTACCCCTGGACCTCCTTCGATGGAGCAGAAGCTAGCAACTTTGACATCAAGCTCCCAGAAACGAAGGGCTGCCAGCTCATAGCAACAGGGACGCTGAGGAAGAGCTCGTCCACCTGCCTGTTTGTCGCCGTGAAGCGGCTGGTCCTTTGCTACGAGATCCAGAGAACTAAGCCTTTCCACCGGAAGTTCAATGAGATCGTGGCCCCGGGACATGTGCAGTGGATGGCCATGTTCAAGGACAGGCTCTGTGTTGGCTACCCCTCCGGGTTCTCTCTGTTGAGCATCCAGGGGGACGGGCAGCCTCTAGACCTGGTAAATCCCGCTGACCCCTCGCTCGCGTTCCTCTCACAGCAGTCTTTCGATGCCCTCTGTGCTGTAGAGCTCAAAAGTGAGGAGTACCTGCTCTGCTTCAGCCACATGGGACTGTACGTGGACCCTCAAGGTCGGAGGTCACGCACGCAGGAGCTCATGTGGCCTGCGGCTCCTGTCGCCTGTA
Seq C2 exon
GTTGCAGCTCCTCCCACGTCACGGTGTACAGCGAATACGGGGTGGATGTCTTCGACGTGCGCACCATGGAGTGGGTTCAGACCATCGGCCTGCGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'52-51,'52-50,54-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(7.9=100)
A:
PF0078017=CNH=FE(74.9=100)
C2:
PF0078017=CNH=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]