BtaEX0009005 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018253 | CHRNA1
Description
Bos taurus cholinergic receptor, nicotinic, alpha 1 (muscle) (CHRNA1), mRNA. [Source:RefSeq mRNA;Acc:NM_176664]
Coordinates
chr2:22125568-22130078:+
Coord C1 exon
chr2:22125568-22125612
Coord A exon
chr2:22126622-22126731
Coord C2 exon
chr2:22129883-22130078
Length
110 bp
Sequences
Splice sites
3' ss Seq
AAAAATGTCTTCATTTCTAGCAA
3' ss Score
7.19
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
GATGAAGTAAATCAGATCGTGACAACCAATGTTCGTCTGAAACAG
Seq A exon
CAATGGGTGGATTACAACTTAAAATGGAATCCAGATGACTATGGTGGCGTGAAAAAAATTCACATTCCTTCGGAAAAGATCTGGCGCCCAGACCTCGTTCTTTATAACAA
Seq C2 exon
TGCAGATGGTGACTTTGCCATCGTCAAGTTCACCAAAGTGCTCCTGGACTACACTGGCCACATCACATGGACACCTCCTGCCATCTTTAAAAGCTACTGCGAGATCATCGTCACCCACTTTCCCTTTGACGAACAGAACTGCAGCATGAAGCTGGGCACCTGGACCTATGATGGCTCCGTGGTGGTCATCAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018253_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.7=100)
A:
PF0293118=Neur_chan_LBD=FE(17.3=100)
C2:
PF0293118=Neur_chan_LBD=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTAAATCAGATCGTGACAACCA
R:
GTTGATGACCACCACGGAGC
Band lengths:
236-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development