MmuEX6102204 @ mm9
Exon Skipping
Gene
ENSMUSG00000027107 | Chrna1
Description
cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) [Source:MGI Symbol;Acc:MGI:87885]
Coordinates
chr2:73409470-73412422:-
Coord C1 exon
chr2:73412378-73412422
Coord A exon
chr2:73411317-73411426
Coord C2 exon
chr2:73409470-73409665
Length
110 bp
Sequences
Splice sites
3' ss Seq
GGAAATGTTTCTCTTTCTAGCAA
3' ss Score
6.51
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GATGAAGTAAATCAGATTGTGACAACCAATGTACGTCTGAAACAG
Seq A exon
CAATGGGTCGATTACAACTTGAAATGGAATCCAGATGACTATGGAGGAGTGAAAAAAATTCACATCCCCTCGGAAAAGATCTGGCGGCCGGACGTCGTTCTCTATAACAA
Seq C2 exon
CGCAGACGGCGACTTTGCCATTGTCAAATTCACCAAGGTGCTCCTGGACTACACCGGCCACATCACCTGGACACCGCCAGCCATCTTTAAAAGCTACTGTGAGATCATTGTCACTCACTTTCCCTTCGATGAGCAGAACTGCAGCATGAAGCTGGGCACCTGGACCTATGACGGCTCTGTGGTGGCCATTAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027107-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.7=100)
A:
PF0293118=Neur_chan_LBD=FE(17.3=100)
C2:
PF0293118=Neur_chan_LBD=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTAAATCAGATTGTGACAACCA
R:
GGGTTAATGGCCACCACAGAG
Band lengths:
238-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: