DreEX0021685 @ danRer10
Exon Skipping
Gene
ENSDARG00000009021 | chrna1
Description
cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
Coordinates
chr6:10586064-10591202:-
Coord C1 exon
chr6:10591158-10591202
Coord A exon
chr6:10587730-10587839
Coord C2 exon
chr6:10586064-10586259
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGTCTCGTGTTCAAGCAA
3' ss Score
5.38
5' ss Seq
CAAGTATAA
5' ss Score
-0.82
Exon sequences
Seq C1 exon
GATGAAGTTAATCAGATTGTCACCAGTAATGTACGGCTAAAGCAG
Seq A exon
CAATGGAAGGATGTGCATCTGCAGTGGAATCCGGACGATTACGGAGGCATCAGGAAGATCAGGATCCCCTCGACCGACCTCTGGAAACCCGATTTAGTGCTTTATAACAA
Seq C2 exon
TGCTGATGGAGATTTTGCCATTGTTCACGAGACAAAGGTCTTGTTGGAGCACACCGGCATGATAACGTGGACTCCACCAGCGATCTTCAAGAGCTACTGTGAGATCGTGGTGCTTCACTTTCCCTTCGACCTGCAGAACTGCAGCATGAAACTGGGAACCTGGACCTATGATGGCAACCTTGTGATCATCAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009021-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(10.9=100)
A:
PF0293118=Neur_chan_LBD=FE(17.3=100)
C2:
PF0293118=Neur_chan_LBD=FE(31.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTAATCAGATTGTCACCAGT
R:
GGTTGATGATCACAAGGTTGCC
Band lengths:
237-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]