BtaEX0009023 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045943 | CHRNG
Description
Bos taurus cholinergic receptor, nicotinic, gamma (muscle) (CHRNG), mRNA. [Source:RefSeq mRNA;Acc:NM_174273]
Coordinates
chr2:120991357-120992145:+
Coord C1 exon
chr2:120991357-120991557
Coord A exon
chr2:120991729-120991843
Coord C2 exon
chr2:120992031-120992145
Length
115 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTTGGTCATGGGCAGCGG
3' ss Score
3.62
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
AAAATGGGGAGTGGGCCATCCGGCACCGGCCAGCCAAGATGCTGCTGGACGAGGCGGCCCCAGCCGAGGAGGCAGGCCACCAGAAGGTCGTCTTCTACCTGCTCATCCAGCGCAAGCCCCTCTTCTATGTCATCAACATCATCGCGCCCTGTGTCCTCATCTCCTCCGTAGCCATCCTCATCTACTTCCTTCCTGCCAAGG
Seq A exon
CGGGGGGCCAGAAGTGTACCGTCGCCATCAACGTGCTCCTGGCCCAGACCGTCTTCCTCTTCCTCGTGGCCAAGAAGGTGCCCGAGACCTCCCAGGCGGTGCCACTCATCAGCAA
Seq C2 exon
GTACCTGACCTTCCTCCTGGTGGTGACCATCCTCATTGTCGTGAACGCTGTGGTCGTACTCAACGTGTCTTTGCGGTCCCCCCACACACACTCCATGGCCCGAGGGGTCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045943_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(18.1=57.4),PF0293211=Neur_chan_memb=PU(8.5=30.9)
A:
PF0293211=Neur_chan_memb=FE(15.4=100)
C2:
PF0293211=Neur_chan_memb=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATGCTGCTGGACGAGG
R:
GACCGCAAAGACACGTTGAGT
Band lengths:
245-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development