MmuEX6026019 @ mm9
Exon Skipping
Gene
ENSMUSG00000026253 | Chrng
Description
cholinergic receptor, nicotinic, gamma polypeptide [Source:MGI Symbol;Acc:MGI:87895]
Coordinates
chr1:89105590-89106453:+
Coord C1 exon
chr1:89105590-89105790
Coord A exon
chr1:89106002-89106116
Coord C2 exon
chr1:89106339-89106453
Length
115 bp
Sequences
Splice sites
3' ss Seq
GGTGTCTTGGTCATGTGCAGCGG
3' ss Score
5.94
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
AGAATGGGGAGTGGGCCATCCGGCACCGACCGGCTAAAATGCTCCTGGACTCCGTGGCTCCTGCAGAGGAGGCGGGCCACCAGAAGGTGGTGTTCTACCTGCTTATCCAGCGCAAGCCCCTCTTCTACGTCATCAACATCATCGCCCCCTGTGTGCTCATCTCCTCAGTCGCCATCCTCATCTACTTCCTTCCTGCTAAGG
Seq A exon
CGGGCGGGCAGAAATGCACAGTGGCCACCAACGTGCTCCTGGCCCAGACTGTCTTCCTTTTCCTTGTGGCTAAGAAGGTGCCTGAGACCTCCCAGGCAGTGCCACTCATCAGCAA
Seq C2 exon
GTACCTGACCTTCCTCATGGTGGTGACCATCCTCATCGTCGTGAACTCTGTGGTCGTGCTCAATGTGTCCTTGCGGTCCCCCCACACACACTCCATGGCCCGTGGGGTCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026253-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(18.1=57.4),PF0293211=Neur_chan_memb=PU(8.5=30.9)
A:
PF0293211=Neur_chan_memb=FE(15.4=100)
C2:
PF0293211=Neur_chan_memb=FE(15.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTAAAATGCTCCTGGAC
R:
AAGGACACATTGAGCACGACC
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: