GgaEX1015450 @ galGal3
Exon Skipping
Gene
ENSGALG00000007906 | F1NJ22_CHICK
Description
NA
Coordinates
chr9:16712479-16713469:+
Coord C1 exon
chr9:16712479-16712682
Coord A exon
chr9:16712961-16713075
Coord C2 exon
chr9:16713355-16713469
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTATCCTTTGCTTTGTCAGCGG
3' ss Score
6.3
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AGAATGGAGAATGGGCCATCAAGCACCGCCCTGCACGGAAGATCATCAATTCAGGGCGCTTCACCCCAGATGACATCCAGTACCAGCAGGTGATCTTCTACCTCATCATCCAACGCAAGCCGCTCTTCTACATCATCAACATCATCGTGCCCTGTGTTCTCATCTCCTCCATGGCTGTGCTGGTCTACTTTCTGCCTGCCAAAG
Seq A exon
CGGGGGGGCAGAAGTGCACCGTCTCCATCAATGTCCTCCTGGCCCAGACTGTCTTCCTCTTCCTCATTGCCCAGAAGGTGCCCGAGACCTCCCAGGCAGTGCCACTCATTGGGAA
Seq C2 exon
GTACCTGACCTTCCTCATGGTGGTGACAGTGGTGATTGTGGTGAACGCCGTCATCGTCCTCAACGTCTCACTGAGAACACCCAACACTCACTCCATGTCTCAGAGGGTGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(18.3=58.0),PF0293211=Neur_chan_memb=PU(8.6=30.4)
A:
PF0293211=Neur_chan_memb=FE(15.6=100)
C2:
PF0293211=Neur_chan_memb=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATTCAGGGCGCTTCACC
R:
TGGGTGTTCTCAGTGAGACGT
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]