BtaEX0009490 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021861 | COBRA1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G5E5S2]
Coordinates
chr11:105847477-105849244:-
Coord C1 exon
chr11:105849014-105849244
Coord A exon
chr11:105848217-105848402
Coord C2 exon
chr11:105847477-105847589
Length
186 bp
Sequences
Splice sites
3' ss Seq
GAGGCCTGGCGTCCCGGCAGGTG
3' ss Score
6.94
5' ss Seq
AAGGTGGAC
5' ss Score
2.93
Exon sequences
Seq C1 exon
GTTCCTGAGAAGAAGCTGAAGCTGGTGATGGCTGACAAGGAGCTGTACCGGGCCTGCGCAGTGGAGGTGAAGCGGCAGATTTGGCAGGACAACCAGGCGCTCTTTGGCGATGAGGTCTCCCCGCTGCTGAAGCAGTACATCGTGGAGAAGGAGAGCGCGCTCTTCAGCACGGAGCTCTCAGTCCTGCACAACTTTTTCAGCCCTTCCCCCAAGACCAGGCGCCAGGGTGAG
Seq A exon
GTGGTGCAGAGGCTGACGAGGATGGTGGGGCGCAACGTGAAGCTGTACGACATGGTCCTGCAGTTCCTGCGCACGCTCTTCCTGCGCACGCGCAATGTGCACTACTGCACACTGCGCGCCGAGCTGCTCATGTCCCTGCACGACCTGGACGTCGGCGACATCTGCTCCGTGGACCCCTGCCACAAG
Seq C2 exon
TTCACCTGGTGCCTGGACGCTTGCATCCGAGAGCGGTTTGTGGACAGCAAGAGGGCCCGCGAGCTGCAGGGCTTCCTTGACGGAGTGAAGAAGGGGCAGGAGCAAGTTCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021861_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(16.0=100)
A:
PF062098=COBRA1=FE(12.8=100)
C2:
PF062098=COBRA1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATTTGGCAGGACAACCA
R:
CCCTTCTTCACTCCGTCAAGG
Band lengths:
252-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development