MmuEX6099418 @ mm9
Exon Skipping
Gene
ENSMUSG00000013465 | Cobra1
Description
cofactor of BRCA1 [Source:MGI Symbol;Acc:MGI:1931035]
Coordinates
chr2:25060647-25065604:-
Coord C1 exon
chr2:25065374-25065604
Coord A exon
chr2:25061680-25061865
Coord C2 exon
chr2:25060647-25060759
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTCATGCCCATAGGTG
3' ss Score
10
5' ss Seq
AAGGTAGCG
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTTCCTGAGAAGAAGCTGAAGCTGGTGATGGCTGACAAGGAGTTGTACCGGGCATGTGCTGTGGAAGTGAAGAGGCAGATTTGGCAAGACAACCAGGCTCTCTTTGGTGATGAAGTCTCACCACTGCTGAAGCAGTATATCCTAGAGAAAGAGAGTGCGCTCTTCAGCACAGAGCTCTCTGTGCTGCACAACTTCTTCAGCCCTTCCCCCAAGACCCGGCGCCAAGGAGAG
Seq A exon
GTGGTGCAGAAGCTGACGCAGATGGTAGGGAAGAATGTGAAGCTGTACGACATGGTGCTGCAGTTCCTGCGCACACTGTTCCTGCGGACCAGGAATGTGCACTACTGCACGTTACGAGCTGAGCTGCTCATGTCTTTGCATGACTTGGACGTCAGTGACATCTGCACTGTGGATCCCTGCCATAAG
Seq C2 exon
TTCACCTGGTGCCTGGATGCCTGCATCCGGGAACGGTTTGTGGACAGCAAAAGAGCCCGGGAGCTTCAGGGATTTCTTGATGGTGTGAAGAAGGGCCAGGAACAAGTTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013465-'3-8,'3-7,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(16.0=100)
A:
PF062098=COBRA1=PD(10.5=3.2),PF062098=COBRA1=FE(37.3=100)
C2:
PF062098=COBRA1=FE(22.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGCAAGACAACCAGGCT
R:
CTGGCCCTTCTTCACACCATC
Band lengths:
252-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: