RnoEX0059305 @ rn6
Exon Skipping
Gene
ENSRNOG00000009377 | Nelfb
Description
negative elongation factor complex member B [Source:RGD Symbol;Acc:1307832]
Coordinates
chr3:2425172-2429808:-
Coord C1 exon
chr3:2429578-2429808
Coord A exon
chr3:2426235-2426420
Coord C2 exon
chr3:2425172-2425284
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCTGTCTGCTCCTAGGTG
3' ss Score
11.64
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTTCCTGAGAAGAAGCTGAAGCTGGTGATGGCTGACAAGGAGTTGTACCGGGCATGTGCTGTGGAAGTGAAGAGGCAGATCTGGCAAGATAACCAGGCTCTCTTTGGTGATGAAGTCTCACCACTGTTGAAGCAGTATATCCTAGAGAAGGAGAGTGCACTGTTCAGCACGGAGCTCTCTGTCCTGCACAACTTCTTCAGCCCTTCCCCCAAGACCAGGCGTCAGGGAGAG
Seq A exon
GTGGTGCAGAAGCTGACACAGATGGTAGGGAAGAACGTGAAGCTGTATGACATGGTGCTGCAGTTCTTGCGCACACTGTTCCTTCGGACCAGGAATGTGCACTACTGCACGCTACGAGCCGAGCTGCTGATGTCTTTGCATGACCTGGATGTCAGTGATATCTGCACCGTGGATCCCTGCCATAAG
Seq C2 exon
TTCACCTGGTGCCTGGATGCCTGCATCCGTGAGCGGTTTGTGGACAGCAAACGAGCCCGAGAGCTGCAGGGATTCCTTGATGGTGTGAAGAAGGGCCAGGAACAAGTTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009377-'6-10,'6-8,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(16.0=100)
A:
PF062098=COBRA1=FE(12.8=100)
C2:
PF062098=COBRA1=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGAAGTGAAGAGGCAG
R:
TCAAGGAATCCCTGCAGCTCT
Band lengths:
254-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]