BtaEX0009540 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7308065-7313166:-
Coord C1 exon
chr23:7312975-7313166
Coord A exon
chr23:7310224-7310403
Coord C2 exon
chr23:7308065-7308124
Length
180 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCCACCCCCGGGAAGGAG
3' ss Score
2.04
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GGTGATATTCAGGAGCTTTCCATCATCCCGGGAGTGCAAGCTGCCTACGAATCCTGTGACCAGAAGGAGCTGGAGTGCGAGGGGGGTTGGAGGGAGAGACCTCAGAGACAGCCATCGCACAGAACGCAGAGATCTCCGAAGCAGCAACCACCAAGACTTCACAGGCCACAAAACCAGGAACCCCAGGCACAG
Seq A exon
GAGCAGACAGATCTCCAGGTCCCCCCCACAGCTGACAGGTTCCTGACAGAGGAGTATGGGGAGGGTGGCACAGAGCCCCCAGCAGGGCCCTACGATTACACCTATGCCTATGGGGACGATTACCACGAGGAGACGGAGCTTGGCCCTGCCCTGTCTGCCGAGACAGCCCGCTCGGAAGCC
Seq C2 exon
GCTGCCCGTGGCCCCCGGGGGCTGAAGGGAGAGAAGGGGGAGCCTGCTGTGCTGGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601_MULTIEX1-3/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(6.8=12.5)
A:
NO
C2:
PF0139113=Collagen=PU(1.7=5.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCTTTCCATCATCCCG
R:
GGTTCCAGCACAGCAGGC
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development