DreEX0022849 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7280639-7292938:-
Coord C1 exon
chr19:7292816-7292938
Coord A exon
chr19:7283003-7283224
Coord C2 exon
chr19:7280639-7280692
Length
222 bp
Sequences
Splice sites
3' ss Seq
CTCCTGATGGTACGGTCCAGGTC
3' ss Score
3.65
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GGTGAGATCCAGCAGCTGCTGATCGCATCCAACCCTCAGGCCGCATATGACTTCTGTGAGCATTACAGCCCTGACTGCGACTCTCCTCTGCCCAAAGTCCAGTCCCAGGACCCAAACACCTAT
Seq A exon
GTCGACGAGACTGTCCCCGTTGAGGAAATGGATGCTACCAAGACAGGTGGTGAGGTGGCGTCTCAAACGCCAGAAGAGCCCTTCACTGAGGAGTACATTACAAGCGACTTTGGGATGAAGGAGTATGACTATTCCTACAAGGACTACAATGAGCCCATCATTGAGAGCAAGACGGAGGACACTCTAGGCCCTGCCCTGTCCGCTGTGACAGAGGAGGGGGGT
Seq C2 exon
GCCTCAGTGCGAGCCATTAAGGGAGAGAAGGGAGAGCCTGCTGTCCTTGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422_MULTIEX1-5/5=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=0.916 C2=1.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(8.3=24.4)
A:
NO
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGATCCAGCAGCTGC
R:
GTTCAAGGACAGCAGGCTCTC
Band lengths:
175-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]