DreEX0022847 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7283003-7292938:-
Coord C1 exon
chr19:7292816-7292938
Coord A exon
chr19:7290602-7290718
Coord C2 exon
chr19:7283003-7283224
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCACATGTCTCTCAGCAC
3' ss Score
6.5
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGTGAGATCCAGCAGCTGCTGATCGCATCCAACCCTCAGGCCGCATATGACTTCTGTGAGCATTACAGCCCTGACTGCGACTCTCCTCTGCCCAAAGTCCAGTCCCAGGACCCAAACACCTAT
Seq A exon
CACTTTGATGAAGAGCAGGATGATTATGAATACCCCTATTATTATGAAGGAACTACCAGTGTCCCTCCCTCCCCATCCAAACCTCCCTCCGTCCCAGCCGAGACACTCACTGAACAG
Seq C2 exon
GTCGACGAGACTGTCCCCGTTGAGGAAATGGATGCTACCAAGACAGGTGGTGAGGTGGCGTCTCAAACGCCAGAAGAGCCCTTCACTGAGGAGTACATTACAAGCGACTTTGGGATGAAGGAGTATGACTATTCCTACAAGGACTACAATGAGCCCATCATTGAGAGCAAGACGGAGGACACTCTAGGCCCTGCCCTGTCCGCTGTGACAGAGGAGGGGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422_MULTIEX1-1/5=C1-5
Average complexity
C2
Mappability confidence:
86%=100=86%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=1.000 C2=0.916
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(8.3=24.4)
A:
NO
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTACAGCCCTGACTGCGAC
R:
GCCTAGAGTGTCCTCCGTCTT
Band lengths:
252-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]