HsaEX0016270 @ hg19
Exon Skipping
Gene
ENSG00000204248 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:2187]
Coordinates
chr6:33148888-33154595:-
Coord C1 exon
chr6:33154404-33154595
Coord A exon
chr6:33153478-33153555
Coord C2 exon
chr6:33148888-33148947
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGCCCACCCCCCAATCCCAGCCC
3' ss Score
5.44
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGTGATGTCCAGGAGCTGGCCATTGTCCCAGGGGTCCAGGCAGCCTATGAATCATGTGAACAGAAGGAGCTGGAATGCGAGGGGGGCCAGAGGGAAAGACCCCAAAACCAACAGCCTCACAGAGCCCAGAGATCTCCACAGCAGCAACCATCAAGACTTCACAGGCCACAAAATCAGGAACCCCAGAGCCAG
Seq A exon
CCCACTGAGTCTCTCTACTATGACTACGAGCCCCCCTATTATGATGTGATGACTACGGGGACAACCCCTGATTATCAG
Seq C2 exon
GCTGCCCATGGACCCCGAGGGCTGAAGGGAGAGAAAGGAGAGCCTGCAGTGTTGGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204248_MULTIEX2-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(7.3=14.1)
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAGGAGCTGGAATGCG
R:
TCCTTTCTCTCCCTTCAGCCC
Band lengths:
173-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)