MmuEX0012127 @ mm9
Exon Skipping
Gene
ENSMUSG00000024330 | Col11a2
Description
collagen, type XI, alpha 2 [Source:MGI Symbol;Acc:MGI:88447]
Coordinates
chr17:34181764-34186623:+
Coord C1 exon
chr17:34181764-34181955
Coord A exon
chr17:34182716-34182793
Coord C2 exon
chr17:34186564-34186623
Length
78 bp
Sequences
Splice sites
3' ss Seq
GTCCCCCTCCCTGCTCCCAGCCC
3' ss Score
8.56
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGCGATGTTCAGGAGCTCCTCGTTGTCCCAGGCGTCCAAGCTGCCTATCAGTCTTGTGGGCAGAAGGATCTGGAATGTGAGAGAGAACAGAGGGACGGCCCTCAGACTCAGAAGCCTCACAGAGCCCAGAGATCTCCAAAGAAGGAACCAGCAAGACTTCATAAGCCACAGAGCCAGGAGCCCCAGAAGCAG
Seq A exon
CCCACTGAGTCTCTCTACTATGACTACGAACCCCCCTATTACGATGTGATGACTACGGGGACAGCCCCTGATTATCAG
Seq C2 exon
GTTGCCCACGGACCCCGGGGGCTAAAGGGAGAGAAGGGAGAGCCTGCAGTGCTGGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024330_MULTIEX1-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.701 A=0.954 C2=1.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(7.3=14.1)
A:
NO
C2:
PF0139113=Collagen=PU(1.7=5.0)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCTTGTGGGCAGAAGGA
R:
CCTTCTCTCCCTTTAGCCCCC
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types