DreEX0022848 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7283003-7292938:-
Coord C1 exon
chr19:7292816-7292938
Coord A exon
chr19:7285459-7285587
Coord C2 exon
chr19:7283003-7283224
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCGGCCTACTCCAATCAGGAC
3' ss Score
7.17
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGTGAGATCCAGCAGCTGCTGATCGCATCCAACCCTCAGGCCGCATATGACTTCTGTGAGCATTACAGCCCTGACTGCGACTCTCCTCTGCCCAAAGTCCAGTCCCAGGACCCAAACACCTAT
Seq A exon
GACGTAGATCCTGCTTACTCAGAGGCTGACCACACCCCCACAGAGACCGATTATTATTACACAGTAGAAGAAGAGGCGGCTCCACAGCCAGAGAGTGATCTGACTGGATATGACGAAAGCATTAACCAG
Seq C2 exon
GTCGACGAGACTGTCCCCGTTGAGGAAATGGATGCTACCAAGACAGGTGGTGAGGTGGCGTCTCAAACGCCAGAAGAGCCCTTCACTGAGGAGTACATTACAAGCGACTTTGGGATGAAGGAGTATGACTATTCCTACAAGGACTACAATGAGCCCATCATTGAGAGCAAGACGGAGGACACTCTAGGCCCTGCCCTGTCCGCTGTGACAGAGGAGGGGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422_MULTIEX1-4/5=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=1.000 C2=0.916
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(8.3=24.4)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTACAGCCCTGACTGCGAC
R:
GCCTAGAGTGTCCTCCGTCTT
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]