BtaEX0009628 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013103 | COL1A1
Description
Bos taurus collagen, type I, alpha 1 (COL1A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034039]
Coordinates
chr19:37099831-37102959:+
Coord C1 exon
chr19:37099831-37099938
Coord A exon
chr19:37100025-37100078
Coord C2 exon
chr19:37102852-37102959
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGTGTTCTCCTCCAGGGT
3' ss Score
11.92
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GGTGCTGATGGCCAACCTGGTGCTAAAGGCGAACCTGGTGATGCTGGTGCTAAAGGTGACGCTGGTCCCCCCGGCCCTGCTGGGCCCGCTGGACCCCCCGGCCCCATT
Seq A exon
GGTAACGTTGGTGCTCCCGGACCCAAAGGTGCTCGTGGCAGCGCTGGTCCCCCT
Seq C2 exon
GGTCCCCCTGGCTCTGCTGGTTCTCCCGGCAAAGATGGACTCAATGGTCTCCCAGGCCCCATCGGTCCCCCTGGGCCTCGAGGTCGCACTGGTGATGCTGGTCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013103_MULTIEX1-31/41=30-41
Average complexity
C3
Mappability confidence:
95%=97=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(33.3=63.9)
A:
PF0139113=Collagen=FE(24.6=100)
C2:
PF0139113=Collagen=FE(56.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCAACCTGGTGCTAAAG
R:
GTCCATCTTTGCCGGGAGAAC
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development