BtaEX0009721 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010179 | COL5A3
Description
collagen, type V, alpha 3 [Source:HGNC Symbol;Acc:HGNC:14864]
Coordinates
chr7:15801072-15802078:-
Coord C1 exon
chr7:15802037-15802078
Coord A exon
chr7:15801655-15801717
Coord C2 exon
chr7:15801072-15801146
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTACCTCTGTCTGCAACAGGGG
3' ss Score
8.64
5' ss Seq
CCGGTAGGA
5' ss Score
8.18
Exon sequences
Seq C1 exon
GGACAGCAGTTTGAAGGACCCCCAGGAGCCCCGGGACCCCAA
Seq A exon
GGGGTGGTTGGCCCCTCAGGCCCTCCTGGCCCCCCAGGATTCCCTGGAGACCGTGGTCTACCG
Seq C2 exon
GGCCCTGCTGGCCTCCCAGGCATCCCTGGCATGGATGGGATCCGGGGTCTCCCAGGCACTGTGATCATGATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010179_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.880
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.8=100)
A:
PF0139113=Collagen=FE(27.4=100)
C2:
PF0139113=Collagen=PD(27.4=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCAGTTTGAAGGACCC
R:
GGCATCATGATCACAGTGCCT
Band lengths:
116-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development