RnoEX6034728 @ rn6
Exon Skipping
Gene
ENSRNOG00000020525 | Col5a3
Description
collagen type V alpha 3 chain [Source:RGD Symbol;Acc:70922]
Coordinates
chr8:21818141-21819260:-
Coord C1 exon
chr8:21819219-21819260
Coord A exon
chr8:21818683-21818745
Coord C2 exon
chr8:21818141-21818215
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCTGATTTCGGTCTCCACAGGGA
3' ss Score
9.83
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGACAGCAGTTTGAGGGACCTGCAGGAGCTCCAGGACCCCGG
Seq A exon
GGAATATCTGGTCCTTCAGGCCCTCCTGGGCCTCCGGGCTTCCCTGGGGACCGTGGCCTACCG
Seq C2 exon
GGCCCTGCTGGCCTCCCAGGAATCCCAGGCATTGATGGCGTCCGGGGCCTGCCAGGCACAGTGATCATGATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020525-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.8=100)
A:
PF0139113=Collagen=FE(27.4=100)
C2:
PF0139113=Collagen=PD(27.4=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCAGTTTGAGGGACCTG
R:
CGGCATCATGATCACTGTGCC
Band lengths:
116-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]