BtaEX0009896 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009331 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr7:6083755-6085118:+
Coord C1 exon
chr7:6083755-6083910
Coord A exon
chr7:6084032-6084094
Coord C2 exon
chr7:6084934-6085118
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTAGCCTCTTCTCTCCCCAGATC
3' ss Score
10.21
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GACACCTGCGTGGCTCTGCAGGCCTTGGCAGAGTACGCCATCTTGTCCTATGCGGGCGGCGTCAACCTCACCGTCTCCCTGGCCTCCACCAACTTGGACTACCAGGAGACCTTCGAGCTGCACAGGGGCAACCAGAAGCTTCTGCAGATGGCCGCG
Seq A exon
ATCCCCAGCCTCCCCACGGGGCTGTTTGTGAGCGCCAGGGGTGAAGGCTGCTGTCTGATGCAG
Seq C2 exon
ATTGATGTCACCTACAATGTGCCTGACCCGGTGGCCAAGCCATCCTTCCAGCTGCTTGTGAACCTCCAGGAGCCTGAGGCTGAGCAGCAGCGACCCCCCTCACCTGCCTCCTCAGCTGATGATGATGACCCAGCAGCTGACCAGCACCACCAGGAGTACCAGGTGACCCTGGAGGTGTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009331_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.435
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.2=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCACCAACTTGGACTAC
R:
AGGTTCACAAGCAGCTGGAAG
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development