GgaEX0004949 @ galGal3
Exon Skipping
Gene
ENSGALG00000003742 | CPAMD8
Description
NA
Coordinates
chr28:3794613-3795833:+
Coord C1 exon
chr28:3794613-3794768
Coord A exon
chr28:3795167-3795229
Coord C2 exon
chr28:3795595-3795833
Length
63 bp
Sequences
Splice sites
3' ss Seq
TAACTATGGGTTCTCCACAGATC
3' ss Score
9.67
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACACGTGTGTAGCCCTGCAGGCTCTGGCTGAGTATGCAATCCTTTCTTATGTTGGAGGAGTCAACCTTACCATTTCCTTGGCTTCGACTAATTTAGACTACCAGGAGACATTTGAGCTTAATAAAATGAATAAGAAAGTCCTCCAGACTGCAGTG
Seq A exon
ATCCCCAGTATTCCTACGGGGCTGTTTGTGAGCGCCAAAGGCGAAGGCTGCTGTCTGATGCAG
Seq C2 exon
ATTGATGTCACATACAACGTGCCGGATCCTATTGCCAAACCAGCATTCCAGCTCCTGGTTAACCTGAAGGAGCCAAAGTCAGAGCAGCATCTCCAAGCTCCAGTTCTGCTGCGCTCTCTCTCTCCAGATGAGAATCGCTCTGAAACCCTTCACAGAGAGAGGGCAGTGGTGGATGATGATGACCCGGCTGCAGATCGGGACCATCAGGAGTACAAAGTGATTCTAGAGACCTGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003742_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.2=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTTCCTTGGCTTCGACT
R:
AGGAGCTGGAATGCTGGTTTG
Band lengths:
143-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]