DreEX0003063 @ danRer10
Exon Skipping
Gene
ENSDARG00000056530 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr22:21258891-21262820:+
Coord C1 exon
chr22:21258891-21259046
Coord A exon
chr22:21259295-21259357
Coord C2 exon
chr22:21262573-21262820
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTCTCTTTGTTCAGATA
3' ss Score
10.99
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GACACTTGTGTGGCATTGCAGGCTCTGTCCGAATATGCGATCCTGTCATATGTGGGCGGAGTAAATCTCACTATATCTCTGGCTTCAACTAATCTGGATTTTCAAGAAACTTTTGAACTTCAGTGGGACAACAAGAAGATTCTACAAAAAGCTGTG
Seq A exon
ATACCCAGCATTCCAACAGGACTGTTTGTCAGCGCTAAAGGAGAGGGCTGCTGTCTAATGCAG
Seq C2 exon
ATTGATGTATCCTACAATGTGCCTGATCCTGTGGCCAAACCAGCTTTTCAGTTGAAAGTTGACCTTAAGGAGCCAAGGCAGGAGCAACACATCTTGCCATCCTCACGACACATATCTCCTCGCACACGTTCCCGTGCTGACAACCGCTCAGAGCTGACTCGCAAAAGAAGGGCTCCTGTGGATGACGAGGACCCTGCAGGCCACCAAGATCACCTGGACTACCGTGTTACTTTGGAGGTCTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056530-'35-43,'35-41,37-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.479
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.2=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGCGGAGTAAATCTCAC
R:
CCACAGGATCAGGCACATTGT
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]