BtaEX0010019 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018941 | CPXM2
Description
Bos taurus carboxypeptidase X (M14 family), member 2 (CPXM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206057]
Coordinates
chr26:43933366-43966113:-
Coord C1 exon
chr26:43965921-43966113
Coord A exon
chr26:43954882-43954980
Coord C2 exon
chr26:43933366-43933475
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTCTCATTTATTTTTTAAGGTA
3' ss Score
10.02
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ACTTGGAGCCTGGAGCCTTCCTACGCGCGCCGGGAGCCCGAGCCCGAGCCCTTCTCGCCGCCGCTGCCCGCGGGGCCCGGGGCGGGGGAGCGGGGGCCGCGGCCACCCCAGCCCAGGCCGCCCAAGAAGGCGACGACTAAGCCCAAGAAAGCTCCCAAGAGGGAGAAGTTGGCTCCGCAGACGCCTCGGCCAG
Seq A exon
GTAAAAATATCAACAGAAAAGGCATGAGAACCAAGAGCTCTGAGAAGGCTGCCAGTGATGATCACGGCGTCCCCCTGGCCCGTGACGCTGTCCGAGAGG
Seq C2 exon
GTTGCCCACCTCTTGGTCTGGAAACCTTAAAAATCACAGACTTCCAGCTCCATGCATCCACTTCCAAGCGCTATGGCCTGGGGGCCCATCGGGGGAGACTCAACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018941-'1-3,'1-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.459
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0075420=F5_F8_type_C=PU(14.9=56.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACGACTAAGCCCAAGAAA
R:
GGATGTTGAGTCTCCCCCGAT
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development