HsaEX6090958 @ hg38
Exon Skipping
Gene
ENSG00000121898 | CPXM2
Description
carboxypeptidase X, M14 family member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr10:123842349-123943775:-
Coord C1 exon
chr10:123943652-123943775
Coord A exon
chr10:123880211-123880309
Coord C2 exon
chr10:123842349-123842488
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCTCTCCCCCTTTAGGTA
3' ss Score
13.64
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTGGCTTCATTGCGCCAGACAGCCCCACCGTAGCCTGGGCCCTGAGCTTCTGCCTACCAGGCTGTCAGCAACATCTCAGCAACAGGCTCCAGCCAGTTGGCACATACCTGGCTCAGCTCTACAG
Seq A exon
GTAAACACAGCAACAAAAAAGTTATGAGAACCAAGAGCTCTGAGAAGGCTGCCAACGATGATCACAGTGTCCGTGTGGCCCGTGAAGATGTCAGAGAGA
Seq C2 exon
GCGGGCATTAATGAAAATGATTTTTATGACGGAGCGTGGTGCGCGGGAAGAAATGACCTCCAGCAGTGGATTGAAGTGGATGCTCGGCGCCTGACCAGATTCACTGGTGTCATCACTCAAGGGAGGAACTCCCTCTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121898_MULTIEX2-4/7=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.941 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0075420=F5_F8_type_C=FE(32.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACATCTCAGCAACAGGC
R:
TCCCTTGAGTGATGACACCAGT
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains