MmuEX6014703 @ mm9
Exon Skipping
Gene
ENSMUSG00000030862 | Cpxm2
Description
carboxypeptidase X 2 (M14 family) [Source:MGI Symbol;Acc:MGI:1926006]
Coordinates
chr7:139320035-139346422:-
Coord C1 exon
chr7:139345969-139346422
Coord A exon
chr7:139335351-139335449
Coord C2 exon
chr7:139320035-139320144
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTTTTTTTTTTCTAGGTA
3' ss Score
13.15
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CTGTCCCACCCACCATCTGCACCCGCTGCAGCGCCCGCGCCCCTGTCCCGCGCCGTAGTCGTCATTTGTAGCCCGCCTGCCGCTCCCGGGGACCCGATCCTACCCTGGGTGCGGGGCAGAGCGGGCATGGCCCGTCTGGGGACCGCCTGCCCTGCGCTGGCGCTGGCCCTGGCACTTGTGGCGGTGGCCCTGGCTGGAGTCAGAGCCCAGGGCGCAGCCTTCGAGGAGCCTGACTATTACAGCCAGGAGCTCTGGCGGCGCGGGCGCTATTATGGGCATCCGGAGCCTGAGCCGGAGCCGGAGCTCTTCTCGCCTTCAATGCATGAAGACCTTAGGGTGGAGGAGCAGGAACAGCAGGAGCCGCACCAGCAGGGCCACAGAACTCCCAAGAAGGCCATCAAGCCCAAGAAGGCTCCCAAGAGGGAGAAGTTAGTTGCAGAGACGCCTCCACCAG
Seq A exon
GTAAAAATAGCAACAGAAAAGGCAGAAGAAGCAAGAATCTTGAGAAAGCTGCCAGTGATGACCATGGTGTCCCTGTGGCTCATGAGGATGTCAGAGAGA
Seq C2 exon
GTTGCCCACCTCTTGGTCTGGAAACATTAAAAATCACAGACTTCCAGCTGCATGCCTCCACATCGAAGCGTTATGGCCTGGGAGCCCACCGGGGGAGACTCAACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030862-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=1.000 C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0075420=F5_F8_type_C=PU(14.9=56.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTAGGGTGGAGGAGCAGGAA
R:
CATGCAGCTGGAAGTCTGTGA
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: