BtaEX0010748 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25060572-25062595:-
Coord C1 exon
chr2:25062506-25062595
Coord A exon
chr2:25060982-25061086
Coord C2 exon
chr2:25060572-25060677
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATGTCTACCTTTCCCCTCAGATT
3' ss Score
11.05
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GCAGGCATTCAACAGCCTGTTTTGCTGTATCTTGCAGTGTTCCATGTGCTACCTTTTTCACTCATAGGGATTCTGGAGATCAACAAAAAG
Seq A exon
ATTTTTGGGAACGTCACGGATGCCACCTTGTCTCATGGAATACTGATTGTGATGTACAGCTCGGGACTGGTCAGACTTTATAGCTTCCAAGCCATCACCAAGCAG
Seq C2 exon
TTCATGCAACAGAAACTTGACTTAGGGTGTGCATGCAGATGGGGTGGGACTACTGGAACTGTAGGAGAGGCTCCCTTTGGCATTCCTTGTAATATTAAAATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683-'12-12,'12-11,13-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCATTCAACAGCCTGTT
R:
AATATTACAAGGAATGCCAAAGGGA
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development