GgaEX6042335 @ galGal3
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
NA
Coordinates
chr7:19474950-19477791:-
Coord C1 exon
chr7:19477702-19477791
Coord A exon
chr7:19475560-19475667
Coord C2 exon
chr7:19474950-19475055
Length
108 bp
Sequences
Splice sites
3' ss Seq
GAATATTTTTCTTTTTACAGATA
3' ss Score
9.41
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCAGGTATCCAACAGTCTGTATTGTTCCATCTTGCTGTGTTCCAAGTTTTGCCTCTGTCATTTATTGGAATGCTAGAAATAAACAAAAAG
Seq A exon
ATATTTGGCAACAGTGTGACAGATGTTGCTATTTCTAATGGAATCCTGATTGTAATGTATAGCATGGGTTTGGTCAGGCTCTATAACTTCCAGGACATCTCTGAACAG
Seq C2 exon
TTCATGGAGCGGCCATTTGACTTGGGAAGTGAACTCAATTGGAATGGTGAAGTGGGAGTTGTGGGAAAGTATCCATTTGGTCTTCCATGTAACATTAAAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTATCCAACAGTCTGTA
R:
AGACCAAATGGATACTTTCCCACA
Band lengths:
173-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]