GgaEX6042335 @ galGal4
Exon Skipping
Gene
ENSGALG00000009558 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr7:17529726-17532566:-
Coord C1 exon
chr7:17532477-17532566
Coord A exon
chr7:17530336-17530443
Coord C2 exon
chr7:17529726-17529831
Length
108 bp
Sequences
Splice sites
3' ss Seq
GAATATTTTTCTTTTTACAGATA
3' ss Score
9.41
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCAGGTATCCAACAGTCTGTATTGTTCCATCTTGCTGTGTTCCAAGTTTTGCCTCTGTCATTTATTGGAATGCTAGAAATAAACAAAAAG
Seq A exon
ATATTTGGCAACAGTGTGACAGATGTTGCTATTTCTAATGGAATCCTGATTGTAATGTATAGCATGGGTTTGGTCAGGCTCTATAACTTCCAGGACATCTCTGAACAG
Seq C2 exon
TTCATGGAGCGGCCATTTGACTTGGGAAGTGAACTCAATTGGAATGGTGAAGTGGGAGTTGTGGGAAAGTATCCATTTGGTCTTCCATGTAACATTAAAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTATCCAACAGTCTGTA
R:
AGACCAAATGGATACTTTCCCACA
Band lengths:
173-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]