BtaEX0011033 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19221639-19222720:+
Coord C1 exon
chr7:19221639-19221682
Coord A exon
chr7:19221835-19221884
Coord C2 exon
chr7:19222601-19222720
Length
50 bp
Sequences
Splice sites
3' ss Seq
GTGCTTCTCTCCATCCCCAGGAG
3' ss Score
11.06
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATCCCCCCATCCTGCGGCAGTTCCCCCCAGACTTCCAGGACCAG
Seq A exon
GAGTCTATGCAGATGGTGCCTAAATTCTGCTTCCCTTTTGATGTGGAAAG
Seq C2 exon
GGAGACCCCCAGCACCGCTGTACAGCATTTCACCTTCGTGCTCACAGATCTGACCGGCACCCGCAGGTTTGGTTTCTGCCGCCTGCGGGCTGGTGCTCTCAGCTGTCTCTGTATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(23.0=93.3)
A:
PF0345613=uDENN=FE(26.2=100)
C2:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(3.9=19.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGACTTCCAGGACCAG
R:
GGATACAGAGACAGCTGAGAGC
Band lengths:
136-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development