DreEX6034111 @ danRer10
Exon Skipping
Gene
ENSDARG00000078503 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr1:55536905-55538374:-
Coord C1 exon
chr1:55538331-55538374
Coord A exon
chr1:55537123-55537172
Coord C2 exon
chr1:55536905-55537024
Length
50 bp
Sequences
Splice sites
3' ss Seq
TCTGATGGTTTTGTGTGCAGGAG
3' ss Score
7.72
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
ATCCTGATGTGCTGTTTCAGTTCCCTGAAGACTTTAATGATGAG
Seq A exon
GAGTCTCGGAAGTCGTTGCCTCGCTTCTGCTTCCCTTATGACATAGAGAG
Seq C2 exon
GGTGAAGGACAGTGTGGCGGTGCAGCACTTCACATTCGTCCTGACGGATCTGGAAGGATGCCAGCGATTCGGTTTCTGCAGACTCACGTCTAGCTCGCAGACCTGCCTTTGTATACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078503-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(22.6=93.3)
A:
PF0345613=uDENN=FE(25.4=100)
C2:
PF0345613=uDENN=PD(48.4=73.2),PF0214116=DENN=PU(11.1=22.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTGTTTCAGTTCCCTGA
R:
GGTCTGCGAGCTAGACGTGAG
Band lengths:
140-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]