MmuEX0014240 @ mm10
Exon Skipping
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57075369-57076861:-
Coord C1 exon
chr17:57076818-57076861
Coord A exon
chr17:57076647-57076696
Coord C2 exon
chr17:57075369-57075488
Length
50 bp
Sequences
Splice sites
3' ss Seq
GATGCTTCCTCCCTCTCTAGGAA
3' ss Score
12.04
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATCCCCCCATCCTGCGGCAGTTCCCTCCAGACTTCCAGGAGCAG
Seq A exon
GAAGCCATGCAGATGGTGCCCAGGTTCTGTTTCCCCTTCGACATAGAAAG
Seq C2 exon
GGAGCCACCCAGCCCTGCTGTTCAGCATTTCACCTTTGCCCTCACTGACCTGGTGGGCAACCGTAGATTTGGCTTCTGCCGCCTGCGAGCTGGTGCACGGAGTTGTCTCTGTATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-'4-9,'4-6,6-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(23.0=93.3)
A:
PF0345613=uDENN=FE(26.2=100)
C2:
PF0345613=uDENN=PD(47.5=70.7),PF0214116=DENN=PU(4.4=22.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCCTCCAGACTTCCAGG
R:
TACAGAGACAACTCCGTGCAC
Band lengths:
139-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types