BtaEX0011554 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54103543-54111156:-
Coord C1 exon
chr17:54111037-54111156
Coord A exon
chr17:54109626-54109771
Coord C2 exon
chr17:54103543-54103695
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATACTTCATACATTCTCTAGTTC
3' ss Score
4.94
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTCAGCTTCCAACCTTGTATGACTTTCACTTTGATTCCACACAGAAGAAATGGATACCGTGGAATCAATTAGTTCCAGAGTATGTTCATTCCCGCGAGAGGAAATTTGTTGACATCCTGG
Seq A exon
TTCATACAGTGGATACAACCCGTACTACCTGGACACTGGAGCAAATGGTAAAGATTAGGCAACCTGTTCTTTTGGTTGGTGAATCTGGTACCTCCAAGACAGCCACTACCCACAACTTCCTGAAAAACCTGAATGAAGAGACTAAT
Seq C2 exon
ATTGTGTTAATGGTCAGTTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCCAATGTGGAAAAACGAACCAAAGACACTTATGGCCCACCCATGGGAAAACGCCTCCTGGTGTTCATGGATGACATGAACATGCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'45-49,'45-47,46-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.216
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.4=22.0)
A:
PF127752=AAA_7=FE(17.9=100)
C2:
PF127752=AAA_7=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCTTCCAACCTTGTATGACT
R:
CATCCATGAACACCAGGAGGC
Band lengths:
256-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development