DreEX6011115 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27744442-27748955:+
Coord C1 exon
chr5:27744442-27744658
Coord A exon
chr5:27747120-27747265
Coord C2 exon
chr5:27748803-27748955
Length
146 bp
Sequences
Splice sites
3' ss Seq
TAACCATTTGTCTTTCTCAGTCC
3' ss Score
8.86
5' ss Seq
ACTGTACGT
5' ss Score
6.33
Exon sequences
Seq C1 exon
GTGATGCAGTTGACTGTTATGGTGGATTCTTTGCTGGAGAATGAGGATTTTCTTTTTGAGGAGCTGGAGTGTTGTTTCCTAGAGGCTCTCTACTGTTCACTGGGGGCTTCACTCCTCGATAAAGGCAGACAAAAGTTTGATGCTTTTATCAAAAAGCTGTCCTCTCTCAACAGTGTTCATGATGAGAAGGTGCTGGCTGGTCCTGGAGAGATTCCAG
Seq A exon
TCCCGACAGTAGACACGACTCGTGCTAATTGGCTGCTGGAGCAGATGGTGAAAGTAAAAAGGCCAGTGGTTCTGGTTGGAGAGTCCGGCACCTCTAAAACAGCCACCATACAGAATTTCCTGAGTAATCTCAATACAGACACGACT
Seq C2 exon
ATAATGATGACCATCAATTTCTCATCAAGAACAACCTCTATGGACCTGCAGAGGACTCTGGAGGCAAATGTTGAAAAGAGAACCAAGGACACGTTTGGTCCTCCTATGGGCAAAAGGCTCCTTGTCTTTATGGATGACCTCAACATGCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'48-46,'48-45,50-46=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(1.1=4.1)
A:
PF127752=AAA_7=FE(17.6=100)
C2:
PF127752=AAA_7=FE(18.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGTTCACTGGGGGCTTCA
R:
GCCTTTTGCCCATAGGAGGAC
Band lengths:
245-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]