GgaEX1020150 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4879097-4880825:-
Coord C1 exon
chr15:4880706-4880825
Coord A exon
chr15:4879647-4879792
Coord C2 exon
chr15:4879097-4879249
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTATTCATGATCTTTTTCAGTGC
3' ss Score
8.07
5' ss Seq
TATGTATGT
5' ss Score
3.25
Exon sequences
Seq C1 exon
GTCAGCTGCCAACTTTGTATGACTTTCATTTTGATGGATTTCAAAAAAAGTGGGTACCTTGGATGAAACTTGTTCCTGAATATATTCATAATCCTCAAAAGAAGTTTCTTGACATCCTAG
Seq A exon
TGCCTACAGTGGATACAACACGCACTACTTGGTTGCTAGAACAGATGGTAAAAATAAAACGCCCAGTTGTTCTTGTAGGTGAATCCGGTACCTCTAAAACAGCAACGACGCAAAACTTCTTAAACAGTCTGAATGAAGACCTTTAT
Seq C2 exon
CTTCTCCTAGTGATTAACTTCTCTTCCCGTACAACATCAATGGACATTCAGAGAAATCTAGAGACAAATGTAGAGAAACGATCTAAAGACGCTTATGGCCCTCCTATGGGAAAGCGTCTCATTATTTTCATGGATGATCTGAATATGCCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'48-56,'48-55,49-56
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.157
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(4.8=31.7)
A:
PF127752=AAA_7=FE(17.6=100)
C2:
PF127752=AAA_7=FE(18.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCTGCCAACTTTGTATGAC
R:
ATGAGACGCTTTCCCATAGGAG
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]