BtaEX0011555 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54098864-54103695:-
Coord C1 exon
chr17:54103543-54103695
Coord A exon
chr17:54101878-54102138
Coord C2 exon
chr17:54098864-54099036
Length
261 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTAAAACAATTGAGGTG
3' ss Score
-3.17
5' ss Seq
TCGGTAACT
5' ss Score
6.25
Exon sequences
Seq C1 exon
ATTGTGTTAATGGTCAGTTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCCAATGTGGAAAAACGAACCAAAGACACTTATGGCCCACCCATGGGAAAACGCCTCCTGGTGTTCATGGATGACATGAACATGCCGAAG
Seq A exon
GTGGATGAATATGGCACACAGCAGCCAATTGCCCTGCTGAAACTGCTCTTGGAAAAAGGCTTCTTGTATGACCGGGGGAAGGAGCTGAACTGTAAAAGCATCCGTGACCTCGGCTTTATTGCTGCGATGGGGAAAGCTGGAGGAGGCCGCAACGAAGTCGATCCAAGATTTACTTCGCTCTTCAGTGTCTTCAACATTCCCTTTCCTTCCGAGGAGTCTTTGCACTTAATTTATTCCTCTATCCTCAAAGGCCACACCTCG
Seq C2 exon
GTGTTTCATGAGAGCATCGTGGCTGTGAGTGACAAGCTGACATCCTGCACGTTGACTCTTTACAAAAACATTGTTCAGGATCTGCCGCCCACCCCGTCCAAGTTCCATTACATCTTTAACCTTCGAGATCTCTCACGGGTTTATAACGGTCTTGTCCTCACTAACCCCGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'47-51,'47-50,48-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.7=100)
A:
PF127752=AAA_7=FE(32.1=100)
C2:
PF127752=AAA_7=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCACGTCCATGGATATCC
R:
CGTTCGGGGTTAGTGAGGACA
Band lengths:
298-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development