MmuEX6021062 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125279260-125282255:+
Coord C1 exon
chr5:125279260-125279412
Coord A exon
chr5:125281167-125281427
Coord C2 exon
chr5:125282083-125282255
Length
261 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTAAAAACCTGCCAGGTG
3' ss Score
5.48
5' ss Seq
TCGGTAACA
5' ss Score
5.35
Exon sequences
Seq C1 exon
ATTGTTCTGATAGTCAACTTCTCCTCTCGGACCACATCCCTGGACATCCAGAGAAATCTGGAAGCCAATGTGGAGAAGCGGACTAAGGACACGTATGGGCCGCCCATGGGGAAGCGCCTGCTGGTGTTCATGGATGACATGAACATGCCAAAG
Seq A exon
GTGGATGAGTATGGTACCCAGCAGCCCATCGCTTTGCTGAAGCTGTTGCTAGAAAAGGGCTACTTATATGACCGTGGGAAAGAACTCAACTGTAAGAGTATCCGTGATCTGGGCTTCATCGCTGCTATGGGGAAGGCAGGAGGGGGCCGCAACGAGGTGGACCCCAGATTCCTCTCACTGTTCAGCGTCTTCAATGTCCCTTTCCCATCGGAGGAGTCCCTGAACTTGATCTACTACTCCATTCTGAAGGGTCACACCTCG
Seq C2 exon
ACCTTTAACGAGAGCATCGGCGGCGTGAGCAGGAAGCTGACATTTTGCACATTAACACTTTACAAAAACATCGTTCAAGATCTGCCTCCCACCCCTTCCAAGTTCCATTACATCTTCAACCTCCGAGACCTCTCCAGGGTTTTTAATGGCCTTGTCCTTACTAATCCAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'46-49,'46-48,47-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.6=100)
A:
PF127752=AAA_7=FE(32.0=100)
C2:
PF127752=AAA_7=FE(21.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCTCTCGGACCACATCC
R:
AGGACAAGGCCATTAAAAACCCT
Band lengths:
293-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: