GgaEX0004150 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4924223-4925911:-
Coord C1 exon
chr15:4925759-4925911
Coord A exon
chr15:4924876-4925136
Coord C2 exon
chr15:4924223-4924395
Length
261 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTTTGTGTTACCAAGGTT
3' ss Score
5.11
5' ss Seq
GCGGTAATT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CTTCTCCTAGTGATTAACTTCTCTTCCCGTACAACATCAATGGACATTCAGAGAAATCTAGAGACAAATGTAGAGAAACGATCTAAAGACGCTTATGGCCCTCCTATGGGAAAGCGTCTCATTATTTTCATGGATGATCTGAATATGCCGAGG
Seq A exon
GTTGATGAGTATGGCACACAGCAACCCATTGCCTTGTTGAAGTTGCTACTAGAAAAAGGTTTCTTATATGACCGCAGTAAGGAGATGAACTGTAAAATGCTCCGAGATCTGGGTTTTGTTGCTGCCATGGGGAAAGCTGGAGGAGGTCGGAATGAAGTCGACCCTCGATTCATCTCACTCTTCAGTGTTTTTAACATACCTTTTCCTTCTGAGCAATCACTGAATTTGATCTACGCCTCCATCCTGAAAGGCCACACTGCG
Seq C2 exon
GAGTTTAATGAGTCTATATCAGCCATCTCTGAGACCATAACAGTATGCACCTTGGAGCTTTATAAAAGGATTGTCTGTGACCTACCCCCTACTCCTTCCAAATTCCATTACATTTTTAACCTGCGAGACCTTTCCAGAGTCTATAATGGACTTATTCTTACAACCCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'44-45,'44-44,45-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(18.4=100)
A:
PF127752=AAA_7=FE(31.6=100)
C2:
PF127752=AAA_7=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTAGTGATTAACTTCTCTTCCCG
R:
AGACTCTGGAAAGGTCTCGCA
Band lengths:
292-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]