BtaEX0011561 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30613776-30619014:+
Coord C1 exon
chr4:30613776-30613878
Coord A exon
chr4:30616970-30617209
Coord C2 exon
chr4:30618853-30619014
Length
240 bp
Sequences
Splice sites
3' ss Seq
ATGTTTGTTTTTGTTTTCAGAGA
3' ss Score
10.47
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTATGACAGACAGAAAGTGATGCTTAAAGAAATCCACAGCTGTCAATATGTTGCCTGCATGAATCCGATGGTGGGCAGTTTCACCATCAATCCTAGACTACAG
Seq A exon
AGACATTTCACAGTGTTTGCATTCAACTTCCCATCGCTGGATGCACTGAACACCATCTACAGCCAGATCCTGAGTTTCCATTTCCAGCAGCAAGCATTTGGTCCCTCAGTTCTCAGGAGTGGCCCCACTTTGATACAGGCAACAATCGCATTCCATCAGATGATGGCACATACATTTTTACCCACGGCCATTAAATTCCACTACCTCTTTAATTTGAGAGACTTGTCAAACGTCTTCCAG
Seq C2 exon
GGGATTTTATTCACCTCTCCTGAGTGTTTAAAGTGTCCAAATGATTTAATACGCCTGTGGCTTCATGAATCTTCTCGTGTTTATGGAGACAAACTGATAGACACAAAGGACTGTGATTTGTTTCATAAAAAACTGCTGGAAACTGCTAATAAATACTTTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'59-61,'59-60,60-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(12.5=100)
A:
PF127752=AAA_7=FE(29.2=100)
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGACAGACAGAAAGTGATGCT
R:
AGTATTTATTAGCAGTTTCCAGCAGT
Band lengths:
260-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development