HsaEX6007395 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21739571-21745063:+
Coord C1 exon
chr7:21739571-21739673
Coord A exon
chr7:21741927-21742166
Coord C2 exon
chr7:21744870-21745063
Length
240 bp
Sequences
Splice sites
3' ss Seq
ATATTTGCTTTTCTTTTCAGAGA
3' ss Score
10.46
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTATGATAGACAGAAGGTGATGCTTAAAGAAATCCATAACTGCCAGTATGTCGCCTGCATGAATCCGATGGTGGGCAGCTTCACCATCAATCCCAGGCTACAG
Seq A exon
AGACATTTCACAGTGTTTGCATTCAATTTTCCATCTTTGGATGCACTAAACACCATCTATGGCCAAATCTTTAGCTTCCATTTCCAACAGCAAGCATTTGCTCCATCAATTCTCAGGAGTGGCCCCACTTTGATCCAGGCAACAATAGCATTCCATCAGACAATGATGTGTAACTTTTTACCCACGGCTATTAAATTCCACTACATCTTTAATCTGAGAGATTTATCAAACGTCTTCCAG
Seq C2 exon
GGTATAGATAGTCACATGCTGCTTCAACAGCCCCTCATTTATTGCCACTTTGCTGATAGAGGGAAGGACCCACATTACATGCCAGTGAAGGACTGGGAAGTGCTGAAGACGATTCTTACAGAAACGTTAGACAACTACAATGAACTAAATGCTGCCATGCACCTAGTTTTGTTTGAAGATGCCATGCAACATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(12.5=100)
A:
PF127752=AAA_7=FE(29.2=100)
C2:
PF127802=AAA_8=PU(7.1=29.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATAGACAGAAGGTGATGCTT
R:
ACATGTTGCATGGCATCTTCA
Band lengths:
295-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains