DreEX6040400 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19472443-19476637:-
Coord C1 exon
chr16:19476535-19476637
Coord A exon
chr16:19472698-19472937
Coord C2 exon
chr16:19472443-19472604
Length
240 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTATTCTTCATCAGAGG
3' ss Score
6.98
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GTATGACAGCCAGAAGTTAACAATGAAAGACATAAACAACACTGATTATGTGTCTTGTATGAATCCAACTTCAGGGAGTTTCACAATCAACCCCAGATTGCAG
Seq A exon
AGGCATTTCACAGTGTTAGCGGTCAGCTCACCCAGCCGTGAGACCCTCAGCTCTATCTACGGCTCCATTCTGAACATCCACCTGCAGATACTGCCGTTCAGCCCAGCTGTAATGAGGTGCAGTGCGTTTGTCCTGAAAGCAGCTTTAACCCTACATGAAAGAGTCCTCCAGCACTTCCTCCCTTCCTCCTCCAAGTTTTATCATCTCTTCAACTTGTGGGATTTGTCTCGGATCTTCCAG
Seq C2 exon
GGTCTCCTGTTCTCCAGGCCAGAGTGTGTTAAACGGGGTGCAGATCTATTTCAGCTTTGGATCCATGAATCCAGAAGAGTGTATTCAGATCGTTTTTCTGAACCATCAGACCTTCAGATGTTCCTTAGGTTTCAGGTGGACATTGCACGACAGGCTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(12.5=100)
A:
PF127752=AAA_7=FE(29.2=100)
C2:
PF127752=AAA_7=PD(8.1=40.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGCCAGAAGTTAACAATGA
R:
CTCTGAAGCCTGTCGTGCAAT
Band lengths:
262-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]