BtaEX0011603 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59431867-59434244:+
Coord C1 exon
chr20:59431867-59431989
Coord A exon
chr20:59432166-59432379
Coord C2 exon
chr20:59434021-59434244
Length
214 bp
Sequences
Splice sites
3' ss Seq
CTGAAAGTTGTCTTTCTTAGGTT
3' ss Score
6.95
5' ss Seq
TTGGTAAAA
5' ss Score
3.23
Exon sequences
Seq C1 exon
AGGACAATAGAGAGCTATGTGGATAAACGCATGGGCACCACATATGGCCCTCCAGCAGGAAAGAAGATGACTATCTTCATTGATGATGTGAATATGCCAGTAATCAATGAGTGGGGAGACCAG
Seq A exon
GTTACTAATGAGATAGTACGACAGCTGCTGGAACAGAATGGATTTTATAATCTAGAGAAGCCTGGGGAGTTTACCAGCATTGTGGACATCCAGTTTTTAGCAGCTATGATCCATCCTGGGGGTGGACGCAATGATATACCACAGCGACTCAAGAGGCAGTTCTCGATATTTAACTGCACGCTACCCTCTGATGCTTCTGTGGACAAGATCTTTG
Seq C2 exon
GTGTGATTGGGGTAGGTTATTACTGTACCCAGAGGGGTTTCTCAGAAGAAGTGAGAGATTGGGTGACGAAGTTGGTGCCCCTGACACGTCGACTATGGCAAATGACTAAGATTAAAATGCTCCCAACCCCTGCAAAATTCCATTACGTTTTTAACCTTCGAGATCTTTCTAGGATCTGGCAGGGAATGCTGAACACTACTCCAGAGGTTATCAAGGAACCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'49-50,'49-49,50-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(14.8=100)
A:
PF127752=AAA_7=FE(26.3=100)
C2:
PF127752=AAA_7=FE(27.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATAAACGCATGGGCA
R:
GCATTCCCTGCCAGATCCTAG
Band lengths:
296-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development