GgaEX1020196 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78566508-78569653:+
Coord C1 exon
chr2:78566508-78566630
Coord A exon
chr2:78568615-78568828
Coord C2 exon
chr2:78569430-78569653
Length
214 bp
Sequences
Splice sites
3' ss Seq
ACTACCTGCTTATTTTACAGGTC
3' ss Score
11.18
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
Exon sequences
Seq C1 exon
CGCACAATAGAAAGTTATGTGGACAAGCGCATGGGCACAACATATGGTCCACCTGCAGGCAAAAAGATGACAGTCTTCATTGATGATGTGAATATGCCCATAATAAATGAATGGGGAGATCAG
Seq A exon
GTCACTAATGAGATAGTTAGGCAGCTCATGGAACAGAATGGACTGTATAATCTGGAAAAGCCTGGGGAATTTACCAACATTGTGGACATTCAGTTTTTGGCTGCCATGATCCATCCTGGGGGAGGTCGCAATGACATTCCACAGAGACTCAAGAGGCAGTTTTCTGTGTTCAACTGCACTTTGCCTTCTAATTCTTCTATTGACAAAATTTTTG
Seq C2 exon
GTGTAATTGGAGAAGGGCACTATTGCAGTAAGCGAGGATTTTCAGAACCTGTAAAAGAAACAGTAGCCAAGCTAGTGCCACTGACTCGCAGGTTGTGGCAGGTTACCAAGCTGAAAATGCTGCCCACACCCGCCAAGTTCCATTATGTCTTCAACCTTCGAGATCTCTCAAGAATTTGGCAAGGAATGCTGAACACTACATCAGAAGTGATCAGTGAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'53-57,'53-56,54-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(14.8=100)
A:
PF127752=AAA_7=FE(26.3=100)
C2:
PF127752=AAA_7=FE(27.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGTGGACAAGCGCATGGG
R:
GCATTCCTTGCCAAATTCTTGAGA
Band lengths:
298-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]