DreEX6039499 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9262491-9267590:+
Coord C1 exon
chr16:9262491-9262613
Coord A exon
chr16:9264890-9265103
Coord C2 exon
chr16:9267367-9267590
Length
214 bp
Sequences
Splice sites
3' ss Seq
TCAATTTCCTCTCTTCAAAGGTC
3' ss Score
9.77
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
CGCTCTGTGGAAAGTTATGTAGATAAACGAATGGGAACCACCTACGGCCCTCCGGCAGGGAAGAAAATGTCCATCTTTATTGATGACATCAACATGCCTGTGATCAATGAGTGGGGTGACCAG
Seq A exon
GTCACAAATGAAATAGTTCGGCAGCTGATGGAGCAAAATGGCTTCTTCAACCTGGAAAAACCAGGAGAATTCACCAACATTGTGGATATACAGTTCTTAGCGGCTATGATCCATCCTGGAGGGGGGCGGAATGATGTTCCGCAGAGACTGAAAAGACAGTTTTCAATTTTCAACTGTACTCTTCCATCGAATGCCTCCATAGACAAGATCTTTG
Seq C2 exon
GCGTGATAGGCACAGGTCATTACTGTTCCCATCGAGGGTTTTCAGAGGAAGTACGCAATACAGTGGGCAGGCTGGTTCCACTGACCCGAAGACTGTGGCAAATGACAAAGGTTAAAATGCTGCCCACTCCTGCTAACTTCCACTACATTTTTAACCTGCGTGACCTCTCCCGCATCTGGCAGGGAATGCTTGGTGTGACTGCAGAGGTCATCAGTACACCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(14.7=100)
A:
PF127752=AAA_7=FE(26.1=100)
C2:
PF127752=AAA_7=FE(27.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGGGAAGAAAATGTCCA
R:
AGGTGTACTGATGACCTCTGCA
Band lengths:
292-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]