BtaEX0011610 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59484108-59490290:+
Coord C1 exon
chr20:59484108-59484245
Coord A exon
chr20:59488856-59488991
Coord C2 exon
chr20:59489974-59490290
Length
136 bp
Sequences
Splice sites
3' ss Seq
AAGGCTTTCTTCTTGTTTAGACC
3' ss Score
6.8
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GCCAACCTGGTGGTGCAGGAGAACCGCTACATGTTGGCCATGCAGGATCTGCAGAAGGCCCAGGCAGAGCTGGACGACAAGCAAGCTGAGCTGGACGTGGTGCAGGCTGAGTATGAGCAGGCCATGACCGAAAAGCAG
Seq A exon
ACCTTGCTTGAAGATGCAGAGAGGTGCAGACATAAGATGCAGGCTGCTTCTGCACTGATCGGAGGCTTGGCAGGAGAAAAAGAAAGATGGACAGAGCAAAGTAAAGAGTTTGCAGCACAAACTAAAAGACTTGTAG
Seq C2 exon
GGGATGTGTTGTTGGCTACAGCTTTTCTATCTTATTCTGGTCCCTTTAATCAAGAATTTCGCAATCTGCTGTTAAATGACTGGCAGAAGGAAATGAAAGCCCGGGAAATTCCATTTGGAGACAATCTAAACCTCAATGAGATGTTGATTGATGCTCCTACCATTAGTGAGTGGAACCTCCAAGGCCTGCCCAATGATGACCTGTCTGTTCAGAATGGAATTATTGTCACAAAAGCATCTCGCTATCCTTTGCTAATTGACCCACAGACTCAAGGCAAGATCTGGATTAAAAATAAAGAAAACCAGAATGAACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.9=100)
A:
PF127772=MT=FE(12.9=100)
C2:
PF127772=MT=PD(8.6=28.3),PF127812=AAA_9=PU(25.1=54.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGGCTGAGTATGAGCAG
R:
GACAGGTCATCATTGGGCAGG
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development