GgaEX6020566 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76680067-76682172:+
Coord C1 exon
chr2:76680067-76680204
Coord A exon
chr2:76680797-76680932
Coord C2 exon
chr2:76681856-76682172
Length
136 bp
Sequences
Splice sites
3' ss Seq
TGGTTTATGGTTTTATGTAGGCT
3' ss Score
6.4
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
GCTAATTTAGCAGTCCAGGAAAACCGCCTAACCACTGCTATGTTGGATCTGCAGAACGCTCAAGAAGAACTGAGTGCAAAGCAAGAAGAATTAGATATTGTACAGGCAGAGTATGAAAAAGCCATGAGAGAAAAACAG
Seq A exon
GCTTTGCTTGAAGATGCTGATCGTTGCCGGCATAAAATGCAAACAGCTTCAAGTCTAATTAGTGGTCTAGCAGGTGAAAAAGAGAGATGGACAAAACAGAGTAAAGAATTTGCCTTGCAAACCAAGAGGCTAGTGG
Seq C2 exon
GTGATGTGCTGTTGGCTACAGCATTTCTATCCTACTCTGGTCCCTTTAATGAAGAGTTCCGCAATCTACTATTAAATGACTGGCAAAAGGAAATGAAGGCCCGGAAAATTCCCTTTGGTAACAACCTGAACGTCATAGAAATGTTGACTGATGCTCCTACAATTAGTGAATGGAGCCTTCAAGGATTACCAAATGATGACTTATCCATACAGAATGGAATCATTGTCACTAAAGCATCTCGTTATCCTTTATTAATTGATCCACAGGCACAGGGTAAAATTTGGCTTAAGAACAAGGAAGGCAAAAATGAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'63-70,'63-69,64-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.9=100)
A:
PF127772=MT=FE(12.9=100)
C2:
PF127772=MT=PD(8.6=28.3),PF127812=AAA_9=PU(25.1=54.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGCAGTCCAGGAAAACCGC
R:
GGAATTTTCCGGGCCTTCATT
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]