DreEX6039491 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9307667-9317106:+
Coord C1 exon
chr16:9307667-9307804
Coord A exon
chr16:9314517-9314652
Coord C2 exon
chr16:9316790-9317106
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCACCCTCTTTTTCTCTCAGACT
3' ss Score
9.96
5' ss Seq
TTGGTGTGT
5' ss Score
3.29
Exon sequences
Seq C1 exon
GCTAATCTGGCAGTGCAGGAGAACAGGCTGACCATAGCTAATTTGGACCTCCAGAAAGCCCAGGCAGAATTGGATGCGAAACAAGCAGAGCTGGATGTGGTTCAAGCAGAGTATGAGAAGGCAATGATAGAAAAACAG
Seq A exon
ACTTTACTGGAGGATGCAGAACGGTGTCGACACAAGATGCAGACCGCCTCTAGTCTGATCAGCGGGCTGGCGGGAGAAAAGGAGCGTTGGACACAGCTTAGTAAAGAGTTTGCTGCACAGACCAAACGACTCGTTG
Seq C2 exon
GTGATGTTCTGCTGGCTACTGCCTTCTTGTCCTATTCGGGACCTTTTAACCAAGAGTTCCGCAACCTCCTCCTCACTGATTGGCAGAGAGAAATGAAGTTCCGCCAGATTCCTTTTAGAACCAATCTAAATCTTACTGAGATGTTGATCGATGCTCCAACAGTAAGTGAATGGAACCTGCAGGGACTGCCTAACGATGATCTGTCCATCCAGAATGGGATAATTGTCACAAAAGCTGCCAGATTTCCCCTGCTGATTGACCCCCAGACCCAGGGAAAGATCTGGATCAAGAACAAAGAGTCCAAGAATGAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.9=100)
A:
PF127772=MT=FE(12.9=100)
C2:
PF127772=MT=PD(8.6=28.3),PF127812=AAA_9=PU(25.1=54.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCAGAGCTGGATGTGGTT
R:
CAGTCCCTGCAGGTTCCATTC
Band lengths:
245-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]