BtaEX0011621 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84885549-84890651:-
Coord C1 exon
chr2:84890520-84890651
Coord A exon
chr2:84888765-84888989
Coord C2 exon
chr2:84885549-84885746
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTCTCATCTCTCCAAATCAGGGC
3' ss Score
8.17
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAATTATCTCCTACTTCAGATACAAACTTAGTCCGATCCCTAATGAATCTGATAGACTGTTTTATGAGTGACTTTGCTGATGAAGTCAAAGTAAGAGAGAGAAATGATCGAGAAACTTACTCTTTACTTGAG
Seq A exon
GGCATTTTTCTGTTTTCTTTGATCTGGTCTGTCGGTGCTTCTTGTAAAGATGATGATCGGTTGAAATTTAATAAGGTTCTTCGAGAACTAATGGAAGGCCCGATTTCAGATATAACTCGAAATAGATTTAAATTACTGAGTGGAACTGAACAAACATCTTCAAAACGACTAACTGTTCCATTCCCTGAAAAAGGAACAATTTATGATTATCAGTTTATCACTGAG
Seq C2 exon
GGAATAGGAAAATGGGAACCATGGGTAAAGAAGTTAGCCGAAGCTCCTCCAATTCCTAAGGATGTGATGTTTAATGAAATCATTGTGCCAACTCTGGACACAATTCGATACTCTGCACTAATGGAATTGTTGACCACCCATCAAAAGCCTTCAATATTTGTAGGACCAACTGGAACGGGAAAGAGTGTTTACATTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(17.9=74.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATACAAACTTAGTCCGATCCC
R:
CTTTCCCGTTCCAGTTGGTCC
Band lengths:
300-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development