DreEX0027480 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25188679-25194092:-
Coord C1 exon
chr9:25193961-25194092
Coord A exon
chr9:25191092-25191313
Coord C2 exon
chr9:25188679-25188876
Length
222 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTTACTGAATAGGGC
3' ss Score
9.5
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GAATTATCACCCACATCCAACACGAGCCTGGTGAAATCTCTGATGAATCTGATGGACTGCATGATGGATGAGTTCGGAGATGAGAGCCAGATGAAGAGGATGGACCAGAGAGATGTCTGCTCCTGGCTTGAG
Seq A exon
GGCATCTTTGTATTTTGCCTCTTGTGGTCAGTCGGGGCCAGCTGCACTGAGGAAGGACGGGTGAAGTTTGATGGTTTGGTGAGGGAGATGTTGGTGGGTGGCCTCAGTGAAGAGACTCGCACACGCCATGGAATCCTGGAGCATGTAGAGCCTCCTGCCAAGCAGCTGACTGTGCCTTTACCCACAGAGGGAACGCTCTATGAATACCGCTTCCTCAAAGAG
Seq C2 exon
GGTCCAGGCAGATGGGAATTGTGGACCGAGGAGCTGAAGGCTTTCCCCCCCATTCCCAAAGATGTGCAGTTCAACGAAATAATTGTGCCTACGGAGAACACTGTACGCTACAATGCTCTCATGAAGCTGCTCATCACTCATCAGAAGCCCACCGTCTTTGTTGGCCCCACGGGGACTGGCAAGAGCGTCTATATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'33-34,'33-33,34-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(17.9=74.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACACGAGCCTGGTGAAAT
R:
ATAGACGCTCTTGCCAGTCCC
Band lengths:
308-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]