HsaEX6017577 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196746519-196750996:-
Coord C1 exon
chr2:196750865-196750996
Coord A exon
chr2:196749309-196749533
Coord C2 exon
chr2:196746519-196746716
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTCTCATCTGTCCAATGCAGGGC
3' ss Score
8.78
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAATTATCTCCTACTTCCGATACAAACTTGGTCCGGTCCTTAATGAATCTAATAGACTGTTTTATGGATGATTTTGCTGATGAAGTCAAACTAAAGGAGAGAAATGATCGAGAAACTTACTCTTTGCTTGAG
Seq A exon
GGCATTTTTCTGTTTTCATTGATCTGGTCCGTTGGTGCTTCTTGTACAGATGATGATCGATTGAAATTTAATAAGATTCTTCGAGAACTAATGGAAAGTCCAATTTCAGATCGAACTCGAAATACGTTTAAATTACAGAGTGGTACTGAGCAAACATCCTCAAAGGCACTAACTGTCCCATTTCCTGAAAAAGGAACAATTTATGATTATCAATTTGTCACTGAG
Seq C2 exon
GGAATAGGAAAATGGGAACCATGGATAAAGAAATTGAAAGAAGCTCCTCCAATTCCTAAAGATGTAATGTTTAATGAAATCATTGTGCCAACTCTGGACACAATTCGATACTCTGCATTAATGGAATTGCTGACCACCCATCAAAAGCCTTCAATATTTGTAGGACCAACAGGAACTGGGAAAAGTGTTTACATTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'39-40,'39-39,40-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.093 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(17.9=74.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATACAAACTTGGTCCGGT
R:
TTCCCAGTTCCTGTTGGTCCT
Band lengths:
298-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)